In 3-axis (or cladding alignment) fusion splicing the fibres are viewed through a microscope and camera in two axes (x and y-axis). Precision translation stages accurately align the fibres in the z and x-axis, and the z and y-axis movements respectively prior to fusing. The fibres are brought in to alignment by motors or thumbwheel adjusters.
The core alignment of the fibres is optimised automatically by one of two methods, depending on the design of the splicer.

In a LLID (Local Light Injection and Detection) splicer, the fibres are bent through a sharp radius around special clamps, allowing light to be injected into one and extracted from the other. The system can then manipulate the x and y-axis positions until the light signal is at a maximum, indicating core alignment. An approximation of the splice loss across the joint can also be measured using the same system.

In a PAS (Profile Aligning System) splicer, the boundary between the core and the cladding is viewed with a small video camera through very accurate optics. Image processing techniques can then measure the core offset of the two fibres and automatic stages again bring them in to alignment. An estimate (by viewing, not measuring) of the splice loss can be made after the fibres have been spliced.